EasyMultiProfiler
Tutorial
Chapter 1 Introduction
1.1 Installation and update
1.2 Quick start
1.3 basic information
Chapter 2 Import data
2.1 Multi-omics data
2.2 Single-omics data
2.3 Save and load data
2.4 Demo data and script
Chapter 3 Demo data
3.1 Load MAE
3.2 Summary MAE
Chapter 4 Data Extract
4.1 EMP_assay_extract
4.2 EMP_rowdata_extract
4.3 EMP_coldata_extract
Chapter 5 Data Preparation
5.1 EMP_collapse
5.2 EMP_adjust_abudance
5.3 EMP_feature_convert
5.4 EMP_decostand
5.5 EMP_impute
5.6 EMP_identify_assay
5.7 EMP_modify_assay
5.8 EMP_rrarefy
Chapter 6 Data Analysis
6.1 EMP_alpha_analysis
6.2 EMP_cluster_analysis
6.3 EMP_cor_analysis
6.4 EMP_diff_analysis
6.5 EMP_dimension_analysis
6.6 EMP_enrich_analysis
6.7 EMP_marker_analysis
6.8 EMP_GSEA_analysis
6.9 EMP_WGCNA_cluster_analysis
6.10 EMP_WGCNA_cor_analysis
6.11 EMP_multi_analysis
6.12 EMP_nework_analysis
Chapter 7 Data support
7.1 EMP_filter
7.2 EMP_history
7.3 EMP_inject
7.4 EMP_result
7.5 EMP_summary
7.6 EMP_saver_var
7.7 EMP_taxonomy_import
7.8 EMP_function_import
7.9 EMP_normal_import
7.10 EMP_easy_import
7.11 EMP_mutate
Chapter 8 Data Virtualization
8.1 EMP_boxplot
8.2 EMP_scatterplot
8.3 EMP_enrich_dotplot
8.4 EMP_enrich_netplot
8.5 EMP_fitline_plot
8.6 EMP_GSEA_plot
8.7 EMP_heatmap_plot
8.8 EMP_sankey_plot
8.9 EMP_structure_plot
8.10 EMP_volcanol_plot
8.11 EMP_network_plot
8.12 EMP_barplot
Chapter 9 More Useful Tools
9.1 str_detect_multi
9.2 EMP_to_EMP1
9.3 top_detect
9.4 stat_result
Chapter 10 More Examples
10.1 Meta data modified
10.2 Experiment data
10.3 Paired test and intervention cohort
10.4 Full taxonomy annotation
10.5 Installation issues
10.6 Microbiome example
10.7 Trans example
10.8 Metabolite example
10.9 qPCR example
Contact
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7.9 EMP_normal_import
7.9 EMP_normal_import
Detailed in Section 2.1.5.
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